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Charlotte Bunne

👤 Person
104 total appearances

Appearances Over Time

Podcast Appearances

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

mostly non-interventional data, meaning we have very limited understanding of somehow the effect of different perturbations, perturbations that happen on many different scales in many different environments.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

So we need to collect a lot here.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

I think the overall...

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

journey that we are going with is that we take the data that we have, we make clever decisions on the data that we will collect in the future, and we have this also self-improving entity that is aware of what it doesn't know, right?

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

So we need to be able to understand how well can I predict something on this somewhat regime?

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

If I cannot, then we should focus our data collection effort into this.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

So I think that's

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

Of course, not present state, but this will basically also guide the future collection.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

Yes.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

So in order to somewhat leverage like very different modalities, in order to leverage basically modalities that will take measurements across different scales, like the idea is that we have large, may it be transformer models that might be very different.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

If I have imaging data, I have a vision transformer.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

If I have text data, I have large language models that are designed, of course, for DNA, then they have a very wide context and so on and so forth.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

But so the idea is somewhat that we have a,

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

models that are connected through the scales of biology, because those scales we know, we know which components are somewhat involved or in measurements that are happening upstream.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

So we have the somewhat interconnection of very large model that will be trained on many different data.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And we have this internal model representation that somewhat capture everything they've seen.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

This is what we call those universal representation that will exist across the scales of biology.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

What is great about AI, and so I think this is a bit like a history of AI in short, is the ability to predict the last years, the ability to predict

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

generate right we can generate new hypothesis we can generate modalities that we are missing we can potentially generate certain cellular state molecular state and have a certain certain property but i think what's really coming is this ability to reason so we see this in those very large language models the ability to reason about a hypothesis how we can test it and so this is

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

what those instruments ultimately need to do, right?