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Drew Endy

πŸ‘€ Person
71 appearances

Podcast Appearances

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

I truly believe that as the engineers learn how to construct cells, there will still be profound mysteries in biology and life that will lurk underneath.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Building cells from scratch is no longer a research project.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

It's now an engineering project, which means we can plan to do it and anticipate deadlines.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And it's right in front of us.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Yeah, the question that motivates thinking about a cell as a building is, are cells intrinsically complicated?

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Or do they just appear to be complicated because they're so darn tiny?

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And so we can't see what's going on.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And so as a mental...

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

exercise, imagine taking a cell that might be a millionth of a meter across, a micron, super tiny, and now imagine making it magically a hundred meters long.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

So we're going to scale up.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

We're going to multiply the size of the cell by a factor of a hundred million with a magic wand.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

You know, the cell's not this solid object.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

It's an object comprised of smaller objects, molecules.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And so now we can, at this scale of a 100-meter cell, a building-sized cellβ€”by the way, I would love for somebody to build a building that's a cell.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Yeah, totally.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Or like Roombas or whatever.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

But so a protein inside this building-sized cell is going to be about as big as a basketball.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

I love it.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And then the thing that makes proteins, the ribosomeβ€”

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

This molecular machine that makes proteins from genetic instructions, that's going to be about as tall as a person.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And then the DNA, the inside cells is DNA, the genome, the genetic instructions.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

That DNA for our cell is going to go back and forth across the cell over a thousand times.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

If the building's 100 meters long...

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

The DNA is going to be kilometers long, and it's going to be coiled up and wrapped up and packed inside the cell.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And then another thing that shows up is if you're inside a cell in this building, the building's going to be packed maybe 20% to 40% of stuff.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Wow.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

It's like a hoarder of molecules.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Imagine a bookstore that's 50% full of books almost, and you could just barely move through it.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

All right.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Now, there's one more wrinkle that blows my mind.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

The molecules inside the cell are moving.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

They're not fixed in one position, and they're moving spontaneously automatically.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

because the molecules are free to move due to the energy of the system.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And so that protein that's a little basketball in this big building is moving so fast

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

it's able to go through the entire building within a second.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And so that's what's incredibly interesting to me when we start to think about how are these systems working?

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

How are these cells making other cells?

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

How are they alive?

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

If we could see it and follow it in real time, I'm 100% certain we could figure it out.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

It's just that it's moving so fast and it's so darn tiny, we haven't been able to follow it exactly right yet.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Yeah, I'll give my version and then I beg Kate to chime in too.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

I see there's three different factions or groups that were interested and are interested in the topic.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

One are the folks who are interested in the origins of life.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

where does life come from?

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And so that tribe, if you will, or group has been working towards building cells for a very long time.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Then there's another group that's been taking natural cells and whittling them down to remove all the extra pieces they can and building synthetic genomes with just the stuff needed to keep it going and making a type of minimal synthetic cell starting from natural cells.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And that's been going on for a couple of decades.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And then over the last decade plus, the third group, the engineers are arriving.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And genetic engineering is 50 years old.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

That starts by moving small numbers of genes around.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

By 2010 or so, the people from that group are getting good enough that they can begin to put together 30 or 40 gene systems, making sophisticated biochemical pathways in natural cells.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

There's a subtle point in what Kate's describing that's central to building cells from scratch, which is we're not constrained to any one natural cell.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

So all of life on Earth in nature descends or derives from the life that's already here.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

That's lineage, right?

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

We come from our parents and so on.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

If you're minimizing a natural cell, you're operating within the context of lineage.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And if you wanted to understand it, you can take this top-down approach, as you say, which is to begin to remove pieces bit by bit and see if it's still alive.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

I think of it as whittling or sculpting a block of marble.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

You're removing everything that's not needed.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

When Kate's talking about building a cell from scratch, we are not subject to that constraint because she gets to choose every block of DNA that goes into that system.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

That's the bottom-up, exactly.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

The way I think about it metaphorically is I imagine we're all part of this giant world called lineage land, right?

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And if we leave that continent or world, go to a new world, you know, we just get to build new things.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Wow.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

And it's a very subtle mental shift.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

All of bioengineering right now is Edisonian.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

This is not something that's decades into the future.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

This is something that's a very active field making progress in real time.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Tinker and test, tinker and test.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

We don't know when we go to make something happen, if it'll work or not, until we build it and test it.

Short Wave
Synthetic Cells: The Next Bioengineering Frontier

Thanks for having us.