Menu
Sign In Search Podcasts Charts People & Topics Add Podcast API Pricing

Steve Quake

👤 Person
149 total appearances

Appearances Over Time

Podcast Appearances

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And, you know, a couple of thoughts on that maybe.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

You know, Theo Karaletsos, our lead AI person at CZI says, machine learning is the formalism through which we understand high dimensional data.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And I think that's a very deep statement.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And, you know, biological systems are intrinsically very high dimensional.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

You've got 20,000 genes in the human genome in these cell atlases.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

You're measuring all of them at the same time in each single cell.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And there's a lot of structure in the relationships of their gene expression there that is just not evident to the human eye.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

um and uh for example cell by gene our database um that collects all the the aggregates all of the single cell transcriptomic data is now over 100 million cells um and uh as you mentioned we're seeing ways to increase that by an order of magnitude in the near future

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

um the project that yuri leskovich and i worked on together that charlotte referenced earlier was like a first attempt to build a foundational model on that data to discover some of the correlations and structure that was there and so with a subset i think it was the 20 or 30 million cells we built a large language model

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

and began asking it, what do you understand about the structure of this data?

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And it kind of discovered lineage relationships without us teaching it.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

We trained it on a matrix of numbers, no biological information there.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And it learned a lot about the relationships between cell type and lineage.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And that emerged from that high dimensional structure, which was super pleasing to us.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And really, I mean, for me personally, gave me the confidence to say, this stuff is going to work out.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

There is a future for the virtual cell.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

It's not some made up thing.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

There is real substance there.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

And this is worth investing an enormous amount of CZI resources in going forward and trying to rally the community around as a project.

Ground Truths
Steve Quake and Charlotte Bunne: The Holy Grail of Biology

You know, we don't know.