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iBiology Videos

Science

Activity Overview

Episode publication activity over the past year

Episodes

Skin Fat Regulation: Edriss Yousuf

10 May 2022

Contributed by Lukas

The fat layer in our skin has the ability to expand and shrink. Yet, the regulatory mechanisms for skin fat growth and shrinking are not well understo...

Modeling a Soil Microbiome: Julia Nepper

09 May 2022

Contributed by Lukas

Dirt is anything but dumb. Inside soil lives a community of microbes that play an important role in everything from the environment to agriculture. In...

Negotiating the Transition from PhD to Postdoc Part 3: Naledi Saul

10 Apr 2022

Contributed by Lukas

In this session, you will learn how to thoughtfully choose your next job opportunity and successfully negotiate with both your current research adviso...

Deciding if a Postdoc Offer is Right for You Part 2: Naledi Saul

10 Apr 2022

Contributed by Lukas

In this session, you will learn how to thoughtfully choose your next job opportunity and successfully negotiate with both your current research adviso...

Negotiating a Postdoc Job Offer Part 1: Naledi Saul

10 Apr 2022

Contributed by Lukas

In this session, you will learn how to thoughtfully choose your next job opportunity and successfully negotiate with both your current research adviso...

Preparing Your Postdoc Job Talk Part 2: Naledi Saul

09 Apr 2022

Contributed by Lukas

After receiving an invitation to interview from your prospective postdoc lab you need to develop an interview game plan. Your ultimate goal is to demo...

Preparing for the Postdoc Interview Part 1: Naledi Saul

09 Apr 2022

Contributed by Lukas

After receiving an invitation to interview from your prospective postdoc lab you need to develop an interview game plan. Your ultimate goal is to demo...

Designing your CV and Cover Letter for the Position that You Want Naledi Saul

09 Apr 2022

Contributed by Lukas

When you apply for postdocs and other types of jobs, you typically need to submit a curriculum vitae and a cover letter as part of your application pa...

Scouting for Postdoc Positions Part 2: Rachel Care

09 Apr 2022

Contributed by Lukas

As you start thinking about doing a postdoc, there are a few key questions you need to consider. What type of position will allow you to build the pro...

What to Look for a Postdoc Position: Part 1: Rachel Care

09 Apr 2022

Contributed by Lukas

As you start thinking about doing a postdoc, there are a few key questions you need to consider. What type of position will allow you to build the pro...

 CRISPR, Climate Change, & Forest Health Panel: Part 3

18 Mar 2022

Contributed by Lukas

The third video is a recording of a panel discussion moderated by SCL producer Rosa Veguilla on February 3, 2022. In this conversation, we asked the s...

Corals: On the Brink: Bay and Phelan

18 Mar 2022

Contributed by Lukas

Coral reefs are truly magnificent ecosystems that support an abundance of marine life, and they are under threat. As climate change warms the oceans, ...

Reprogramming in the Inner Ear: Amrita A. Lyer

25 Feb 2022

Contributed by Lukas

Hearing loss, caused by the death of hair cells in the inner ear, is the third most common public health issue in the United States. Currently, there ...

Finding Faith in Science: Tshaka Cunningham

25 Feb 2022

Contributed by Lukas

Dr. Tshaka Cunningham received his PhD in molecular biology from Rockefeller University and completed postdoctoral training at the Institut Pasteur in...

Tumors and the Immune System: Christina Cho

13 Feb 2022

Contributed by Lukas

The National Cancer Act was signed into law in 1971, declaring a “War on Cancer.” While cancer deaths have declined remarkably since then due to m...

Temperature, parasites, and public health: Karena Nguyen

13 Feb 2022

Contributed by Lukas

More than 200 million people are infected with schistosomes, aquatic parasites that cycle between snails and humans, and cause the human disease schis...

Injury Response in Intestinal Villi: Takahiro Ohara

12 Feb 2022

Contributed by Lukas

 Intestinal villi are finger-like projections that line the small intestine, increasing surface area to help with absorption of nutrients. Injuries t...

Chromosomes in inviable hybrids: Maiko Kitaoka

12 Feb 2022

Contributed by Lukas

When we think of what makes two species distinct, we often think of their ability (or inability) to produce viable offspring. But is there anything we...

Soil Microbes and Plant Defenses: Mia Howard

12 Feb 2022

Contributed by Lukas

Unlike most animals, plants don’t have the option to run away when something is trying to eat them. Instead, they develop all kinds of chemical and ...

Drink up to improve brain health: Brandon Yates

12 Feb 2022

Contributed by Lukas

Exercise is like medicine for the mind and body, particularly in aging adults. Regular physical activity not only provides physiological benefits, it ...

Saving The American Chestnut: A Case Study: Part 2

21 Jan 2022

Contributed by Lukas

Saving The American Chestnut: A Case Study, we explore more deeply the complicated question of using biotechnology to make forests more resistant to c...

Mohamed El-Brolosy: Transcriptional Adaptation to Mutations

11 Jan 2022

Contributed by Lukas

Some people harbor deleterious mutations in disease-relevant genes, yet they are completely healthy. How are scientists trying to understand these so-...

Decoding Brain Tumors with Extracellular Vesicles: Cumba García

07 Dec 2021

Contributed by Lukas

Solid tumors, such as those in the brain, can be deadly when they expand or spread to other parts of the body. Before they spread, tumors send out mol...

Maternal Literacy and Brain Development: Paige Greenwood

17 Nov 2021

Contributed by Lukas

In order to succeed in kindergarten and beyond, children must develop language skills within their home reading environment. This environment is often...

BRUCE protein and liver disease: Chrystelle Vilfranc

10 Nov 2021

Contributed by Lukas

Chronic liver diseases affect millions of people worldwide. By understanding how liver disease progresses, we may be able to identify new therapies th...

Using math to understand and define life: Alyssa Adams

22 Oct 2021

Contributed by Lukas

Is it possible to define life using math? Dr. Alyssa Adams’s research seeks to answer precisely this question. In their Share Your Research talk, Dr...

A Walk in the Woods: After the Flames

21 Oct 2021

Contributed by Lukas

What does a redwood forest look like, and sound like, in the wake of a devastating fire? See a forest in a new way in this new cinematic short from th...

Bat Vision Evolution: Alexa Sadier

20 Oct 2021

Contributed by Lukas

Bat species are numerous and diverse, and are found in nearly every corner of the globe. Therefore, they serve as a valuable system to study the evolu...

Restoration Ecology in Coastal Wetland Ecosystems: Alex Moore

06 Oct 2021

Contributed by Lukas

Dr. Alex Moore provides an introduction to coastal wetlands, including the functional role they play in our world, as well as the many ways that these...

The Future of Forests: Part 1

01 Sep 2021

Contributed by Lukas

Trees are magnificent organisms that have evolved very slowly over millions of years, making it hard for them to adapt to rapid changes in the environ...

The Mysteries of the Methanogens Part: 2 Dipti Nayak

14 Aug 2021

Contributed by Lukas

Nayak describes research she has done on methanogenic archaea – microorganisms that produce the potent greenhouse gas methane. One species of methan...

Educational science videos: Paper discussion and Q&A: Laci Gerhart-Barley

21 Jul 2021

Contributed by Lukas

Educational science videos are commonly used in undergraduate biology instruction, but what do we know about the student perspective on them? In this ...

Synthetic Cells Part 2: Kate Adamala

13 Jul 2021

Contributed by Lukas

Synthetic cells can be used to teach us about the basic principles of life and evolution, and they hold promise for a range of applications including ...

Understanding Meningioma Biology: Abrar Choudhury

24 Jun 2021

Contributed by Lukas

Meningioma is the most common intracranial tumor, with limited treatment options. In order to identify new therapies for meningioma, it is important t...

What is a Peer Mentoring Group? Part 1: Joanne Kamens

17 Jun 2021

Contributed by Lukas

Mentors shape our careers by guiding us through difficult decisions. But, how do you find a good mentor? In this series, Dr. Joanne Kamens advocates f...

Peer Mentoring Groups Logistics Part 2: Joanne Kamens

17 Jun 2021

Contributed by Lukas

How do you go about forming a Peer Mentoring Group? In her second video, Kamens explains the logistics of forming a Peer Mentoring Group. First, you n...

Mentoring Best Practices Part 3: Joanne Kamens

17 Jun 2021

Contributed by Lukas

As Kamens explains, the commitment of the members is crucial for the success of the Peer Mentoring Group. In her third talk, Kamens overviews what are...

Synthetic Cells Part 1: Kate Adamala

12 May 2021

Contributed by Lukas

Life on Earth evolved once - this means that all biological systems on our planet are rooted in the same fundamental framework. This framework is extr...

Gregor Mendel’s Famous Genetics Experiment: Shirley Tilghman:

12 May 2021

Contributed by Lukas

Gregor Mendel’s experiments with pea plants laid the foundation for our understanding of genetic inheritance. In this video, Shirley Tilghman tells ...

Stories of CRISPR: Rodolphe Barrangou

11 May 2021

Contributed by Lukas

Rodolphe Barrangou studies beneficial microbes, focusing on the occurrence and diversity of lactic acid bacteria in fermented foods and as probiotics....

Genome Engineering with CRISPR-Cas9: Doudna, Jinek, Charpentier

10 May 2021

Contributed by Lukas

Jennifer Doudna and Emmanuelle Charpentier won the 2020 Nobel Prize in Chemistry for their development of a powerful gene editing tool known as the CR...

The Making of a Parasitic Plant : Caitlin Conn

28 Jan 2021

Contributed by Lukas

Parasitic plants are important in natural ecosystems and in agriculture. Parasitism is a successful life strategy that has convergently evolved in all...

The Knight Study: Clicker Questions and Peer Discussion

16 Jan 2021

Contributed by Lukas

Do students learn more with clickers and peer-discussion? Bill Wood (University of Colorado, Boulder) describes the Knight et al. study, which lo...

Think-Pair-Share

15 Jan 2021

Contributed by Lukas

Think-Pair-Share is an active learning technique that can be used in small or large enrollment courses to engage students and encourage them to practi...

Clickers

14 Jan 2021

Contributed by Lukas

Clickers are Audience Response Systems that enable instructors to ask a multiple-choice question, poll students for an answer, and display the aggrega...

Addressing The Problem: Active Learning

13 Jan 2021

Contributed by Lukas

How can one shift from a teacher-centered to a student-centered classroom model? What are the benefits of active learning for students and instructors...

The Problem with Traditional Undergraduate Biology Education

12 Jan 2021

Contributed by Lukas

What are the issues with traditional undergraduate biology education? What is the role of an educator in a 21st century college classroom? What is mis...

Early Career Scientists and Preprints Q&A

12 Jan 2021

Contributed by Lukas

We have an online Q&A (hosted on January 6th, 2021) discussing the benefits and limitations of preprints from the perspective of early-career scientis...

Introduction to the Scientific Teaching Series

11 Jan 2021

Contributed by Lukas

Course Directors A. Malcolm Campbell, Kimberly Tanner, and Bill Wood talk about the reasons why we need to reform undergraduate biology education and ...

Conversations in Science with Dan Rather and Harold Varmus: From Oncogenes to PLOS

10 Jan 2021

Contributed by Lukas

Dr. Harold Varmus talks to Dan Rather about his journey from literature major to scientist, and from the discovery of oncogenes to creating PLoS. Varm...

Conversations in Science with Dan Rather and Shirley Tilghman: The Future of Science Training

09 Jan 2021

Contributed by Lukas

How should we consider a journey through a career in science? How should we think of the future of science training? Few have given these kinds of que...

Conversations in Science with Dan Rather and George Shultz: Climate Change and Renewable Energy

08 Jan 2021

Contributed by Lukas

Secretary Shultz has been addressing global crises inside and outside of government for decades. He now has his attention firmly focused on concerns o...

Conversations in Science with Dan Rather and Paul Nurse: The State of Science

07 Jan 2021

Contributed by Lukas

Paul Nurse and Dan Rather have both spent their lives looking at the world and how it works, albeit from very different perspectives. Now the Nobel Pr...

Conversations in Science with Dan Rather and Eric Kandel: Neuroplasticity

06 Jan 2021

Contributed by Lukas

Eric Kandel won the Nobel Prize in Physiology or Medicine in 2000 for his work on the nervous system. Here, he discusses the mind, the brain, and his ...

Conversations in Science with Dan Rather and Chris Field: Climate Change

06 Jan 2021

Contributed by Lukas

There are many challenges when it comes to addressing the destructive effects of climate change, and few people are better suited to address these cha...

The Tools: Active Learning Methods

05 Jan 2021

Contributed by Lukas

How can instructors get started with active learning? What simple and effective active learning methods can easily be implemented in a course? Hear f...

Classroom Models

05 Jan 2021

Contributed by Lukas

Compare different pedagogical approaches and undergraduate biology classrooms. Reflect on how your teaching fits within the spectrum of educational mo...

Conversations in Science with Dan Rather and Jennifer Doudna: The Discovery of a Gene Editing Technology

05 Jan 2021

Contributed by Lukas

In the last few years, the term CRISPR has exploded on the global scene, and with it UC Berkeley professor Jennifer Doudna, one of the pioneers in the...

Conversations in Science with Dan Rather and Dalai Lama: Meditation and the Brain

04 Jan 2021

Contributed by Lukas

The Dalai Lama has always had a keen interest in science. In this interview from 2008, Dan Rather and His Holiness talk science and what we can learn ...

Conversations in Science with Dan Rather and Daniel Colón-Ramos: Encouraging Scientific Exploration

03 Jan 2021

Contributed by Lukas

Daniel Colón-Ramos began his life in science by being fascinated as a young boy by the unique environment of his native Puerto Rico. But in formal sc...

Jennifer Doudna: Genome Engineering with CRISPR-Cas9: Birth of a Breakthrough Technology

02 Jan 2021

Contributed by Lukas

Jennifer Doudna tells the story of how studying the way bacteria fight viral infection turned into a genomic engineering technology that has transform...

Kevin Eliceiri: ImageJ

01 Jan 2021

Contributed by Lukas

Since 1987, different versions of ImageJ have been used by scientists to analyze biological images. In this talk, Dr. Kevin Eliceiri provides an overv...

Kevin Eliceiri & Anne Carpenter: The Scientific Community Image Forum

01 Jan 2021

Contributed by Lukas

The Scientific Community Image Forum is an online resource that helps scientists answer their bioimage analysis questions. In this talk, Dr. Anne Carp...

Kevin Eliceiri & Anne Carpenter Part 5: Measurement and Phenotype Classification

31 Dec 2020

Contributed by Lukas

In this series, Dr. Anne Carpenter and Dr. Kevin Eliceiri provide an overview of bioimage analysis. Pre-processing is the first step that follows imag...

Kevin Eliceiri & Anne Carpenter Part 4: Tracking

31 Dec 2020

Contributed by Lukas

In this series, Dr. Anne Carpenter and Dr. Kevin Eliceiri provide an overview of bioimage analysis. Pre-processing is the first step that follows imag...

Kevin Eliceiri & Anne Carpenter Part 3: Segmentation

31 Dec 2020

Contributed by Lukas

In this series, Dr. Anne Carpenter and Dr. Kevin Eliceiri provide an overview of bioimage analysis. Pre-processing is the first step that follows imag...

Kevin Eliceiri & Anne Carpenter Part 2: Pre-Processing

31 Dec 2020

Contributed by Lukas

In this series, Dr. Anne Carpenter and Dr. Kevin Eliceiri provide an overview of bioimage analysis. Pre-processing is the first step that follows imag...

Kevin Eliceiri & Anne Carpenter Part 1: The Basics of Bioimage Analysis: Getting Started

31 Dec 2020

Contributed by Lukas

In this series, Dr. Anne Carpenter and Dr. Kevin Eliceiri provide an overview of bioimage analysis. Pre-processing is the first step that follows imag...

Kevin Eliceiri & Anne Carpenter Part 6: Tips and Best Practices

31 Dec 2020

Contributed by Lukas

In this series, Dr. Anne Carpenter and Dr. Kevin Eliceiri provide an overview of bioimage analysis. Pre-processing is the first step that follows imag...

Anne Carpenter: CellProfiler

30 Dec 2020

Contributed by Lukas

In this talk, Dr. Anne Carpenter provides an overview of CellProfiler, a free, open-source software program for image analysis. CellProfiler helps sci...

Loic Royer: Multi-Dimensional Microscopy Datasets: Storing, Processing, and Visualizing

28 Dec 2020

Contributed by Lukas

Modern microscopy produces large multi-dimensional datasets, which creates new challenges for data storage, processing and visualization. In this talk...

Jason Swedlow: Metadata in BioImaging: Management, Organization, and Sharing BioImaging Data

28 Dec 2020

Contributed by Lukas

In order to understand an image of a biological sample and what it represents, one needs to understand its metadata. Metadata is the information behin...

Christian Tischer: Introduction to Bioimage Analysis

28 Dec 2020

Contributed by Lukas

Microscopy is a key technology driving biological discovery. Nowadays, microscopy based scientific findings must be substantiated by quantitative imag...

Nico Stuurman: Introduction to Image Acquisition for Quantitative Analysis

27 Dec 2020

Contributed by Lukas

How do we visualize biological samples? In this talk, Dr. Nico Stuurman provides an overview of the different tools, equipment, and software available...

Ted Yednock Part 2: Response to the Emergence of Progressive Multifocal Leukoencephalopathy

26 Dec 2020

Contributed by Lukas

Just a few months after Tysabri was approved for MS treatment, two patients developed progressive multifocal leukoencephalopathy (PML), a fatal or ser...

Ted Yednock Part 1: Immune Cell Migration to the CNS

26 Dec 2020

Contributed by Lukas

Yednock relates the discovery and development, over 15 years, of the drug Tysabri, an alpha4 integrin antibody, as a treatment for multiple sclerosis....

Tejal Desai & Robert Bhisitkul: Advancing the Treatment of Retinal Diseases

25 Dec 2020

Contributed by Lukas

Robert Bhisitkul and Tejal Desai describe how treatment for retinal diseases leading to vision loss, such as age related macular degeneration, may be ...

Ricardo Dolmetsch: Neurodevelopmental disease: Drug Discovery in Neuroscience

24 Dec 2020

Contributed by Lukas

Drug discovery for diseases of the nervous system is difficult. Although mouse models are helpful to study many human diseases, they have serious limi...

Christine Stadelmann & Mikael Simons Part 2: Neuropathology of Multiple Sclerosis

23 Dec 2020

Contributed by Lukas

MS begins as a disease of intermittent episodes with recovery in between. With time, however, MS changes to a progressive disease with increasing disa...

Christine Stadelmann & Mikael Simons Part 1: Myelination, Remyelination and Multiple Sclerosis

23 Dec 2020

Contributed by Lukas

Multiple sclerosis (MS) is a debilitating autoimmune disease in which immune cells infiltrate the central nervous system and attack the myelin sheath ...

Tom Gadek Part 3: Discovery and development of Lifitegrast: Clinical Study

22 Dec 2020

Contributed by Lukas

In his third lecture, Gadek outlines Lifitegrast clinical trials, from Phase 1 to Phase 3, and presents evidence of Lifitegrast’s safety profile in ...

Tom Gadek Part 2: Discovery and development of Lifitegrast to treat dry eye syndrome: Pharmacology

22 Dec 2020

Contributed by Lukas

In his second lecture, Gadek reviews the molecular mechanism of dry eye syndrome, focusing on the role of inflammation and T-cells in this disorder.  ...

Tom Gadek Part 1: The SARcode Story: How to build a biotech company

22 Dec 2020

Contributed by Lukas

Using the company he co-founded, SARcode, as an example, Dr. Tom Gadek tells us how one converts a novel idea into a successful company.  He walks us...

Deepak Srivastava Part 2: A Change of Heart: In vivo Cellular Reprogramming

21 Dec 2020

Contributed by Lukas

About half of the cells in an adult heart are cardiac myocytes, or muscle cells, and about half are cardiac fibroblasts or support cells.  Following ...

Deepak Srivastava Part 1: A Change of Heart: Embryonic Heart Development

21 Dec 2020

Contributed by Lukas

During embryogenesis, the heart needs to form a specific three-dimensional shape or a child will be born with a defective heart. Srivastava and his co...

Louis Ptáček & Ying-Hui Fu Part 2: Understanding our Sleep Behaviors

20 Dec 2020

Contributed by Lukas

By studying families with sleep/wake disorders, Fu and Ptáček have shown that mutations that cause changes in the phosphorylation or acylation of th...

Louis Ptáček & Ying-Hui Fu Part 1: Connections between Clock and other Phenotypes

20 Dec 2020

Contributed by Lukas

By studying families with sleep/wake disorders, Fu and Ptáček have shown that mutations that cause changes in the phosphorylation or acylation of th...

Wallace Marshall & Jacque Duncan Part 2: Ciliopathies and Retinal Degeneration

19 Dec 2020

Contributed by Lukas

In the second video, Dr. Duncan explains that the inner segment of photoreceptor cells, where proteins are made, and the outer segment, where light is...

Wallace Marshall & Jacque Duncan Part 1: Ciliopathies and Retinal Degeneration

19 Dec 2020

Contributed by Lukas

Cilia and flagella are complex, but highly conserved, structures found on most cells of the human body. Mutations in proteins localized to cilia can c...

Bryan King & Matthew State Part 2: From Genes to Pathology in Autism Spectrum Disorders

18 Dec 2020

Contributed by Lukas

In the second lecture, Dr. Matthew State overviews the hunt for genes associated with autism and explains how studying de-novo rare mutations in the g...

Bryan King & Matthew State Part 1: Developing Autism Spectrum Disorder Therapeutics: Treatment Targets and Tools from 30,000 Feet

18 Dec 2020

Contributed by Lukas

In the first lecture, Dr. Bryan King introduces the autism spectrum disorder (ASD) and defines the clinical criteria that characterizes ASD. Although ...

Prescott Woodruff & Joseph Arron Part 2: Asthma heterogeneity: biomarkers and drug development

17 Dec 2020

Contributed by Lukas

Asthma is a heterogeneous disease with varying degrees of airway inflammation and variable response to treatment with inhaled corticosteroids. Woodruf...

Prescott Woodruff & Joseph Arron Part 1: Molecular Phenotyping of Asthma

17 Dec 2020

Contributed by Lukas

Asthma is a heterogeneous disease with varying degrees of airway inflammation and variable response to treatment with inhaled corticosteroids. Woodruf...

Carolyn Calfee & Michael Matthay Part 1: Acute Respiratory Distress Syndrome: An Overview

16 Dec 2020

Contributed by Lukas

Acute respiratory distress syndrome is a life threatening condition with few effective treatment options. Preliminary studies using mesenchymal stem c...

Carolyn Calfee & Michael Matthay Part 2: Mesenchymal Stem Cell Therapy for ARDS

16 Dec 2020

Contributed by Lukas

In Part 2, Dr. Matthay provides the rationale behind treating ARDS patients with MSC. Initial studies in a mouse model of ARDS, showed that treatment ...

Manu Prakash: Scientific Curiosity: Finding Sublime in the Mundane

15 Dec 2020

Contributed by Lukas

Manu Prakash always yearned to know the why and the how of things. As a boy in India, he spent endless hours playing outside with animals and making f...

Rebecca Calisi Rodríguez: Charting an Original Path

14 Dec 2020

Contributed by Lukas

Rebecca Calisi Rodríguez’s research on pigeons, like her life, is one of charting an original path. Her experiences as a Mexican-Italian-American w...

Esteban Burchard Part 3: Inclusion of Minorities in Science and Medicine: An Inclusive Future

13 Dec 2020

Contributed by Lukas

There is ample evidence that race can be a major factor in health outcomes. But racial and ethnic minorities are underrepresented in clinical and biom...

Esteban Burchard Part 2: The Impact of Race and Genetic Ancestry on Medicine: Which Box Do I Check?

13 Dec 2020

Contributed by Lukas

There is ample evidence that race can be a major factor in health outcomes. But racial and ethnic minorities are underrepresented in clinical and biom...

Esteban Burchard Part 1: Racial Bias in Science and Medicine: Who’s Included?

13 Dec 2020

Contributed by Lukas

There is ample evidence that race can be a major factor in health outcomes. But racial and ethnic minorities are underrepresented in clinical and biom...