SE2: How Sequencing is used

Iuliia killed the stripey catChapters:00:00 Intro00:04:44 Stripes00:11:40 Sanger with colors00:17:20 CATCATCAT...00:33:20 Planes00:38:15 Genome assembly00:40:00 Transcriptomics01:01:00 Hi-C Why women are stripey: https://www.youtube.com/watch?v=BD6h-wDj7bwFuture-science about str profiling: https://www.future-science.com/doi/10.2144/000112582Mark Santucci explaining str profiles: https://www.youtube.com/watch?v=Eg3gH2wmAW8NIJ explaining the theory for beginners:https://nij.ojp.gov/topics/articles/what-str-analysisMIT on genome assembly: https://www.youtube.com/watch?v=ZYW2AeDE6wUFundamentals of genome assembly by Bioinformatics DotCa:https://www.youtube.com/watch?v=5wvGapmA5zMGenome assembly tips from F1000Research:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850084/CD Genomics explaining some genome assembly metrics:https://www.cd-genomics.com/an-overview-of-genome-assembly.htmlGeneticeducation giving an intro to transcriptomics:https://geneticeducation.co.in/what-is-transcriptomics/A slideshare explaining transcriptomics:https://www.slideshare.net/divyasrivastava17/transcriptome-analysisHow to create a volcano plot in R:https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot-r/tutorial.htmlBioinformatic walk-through by the galaxy project with a typical RNA-Seq experiment:https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-counts-to-genes/tutorial.htmlRNA splicing explained by arpan: https://www.youtube.com/watch?v=IJQv1H-2IoIkhanacademy on RNA processing:https://www.khanacademy.org/science/ap-biology/gene-expression-and-regulation/transcription-and-rna-processing/a/eukaryotic-pre-mrna-processingSince 2018, West German Genome Center (https://wggc.de/)operates as the next generation sequencing facility and supportsresearch in genomics & transcriptomics by providing expertise andsequencing services. WGGC is a part of the Next Generation Sequencing Competence Network (NGS-CN: https://ngs-kn.de/)- network of NGS core facilities in Germany.Listen to our podcast and we're happy to receive your feedback&questions via Email ( podcast[dot]explain[at]gmail[dot]com ).The Explain Podcast is recorded at the Medienlabor atHeinrich-Heine University of Düsseldorf(https://medienlab.phil.hhu.de/).Our podcast is an outreach activity within the national genomicsfacility "West German Genome Center" funded by the DFG(https://www.dfg.de/) (No.407493903).License NoticeThis podcast including all episodes, unless otherwise noted, is licensed under a ⁠⁠⁠Creative Commons Attribution 4.0 International License⁠⁠⁠.You are free to share, remix, and use this content as long as you give appropriate credit, provide a link to the license, and indicate if changes were made.Attribution:Podcast Title: Explain PodcastCreators: Iuliia Novoselova, Daniel RickertWebsite: ⁠⁠⁠https://ngs-cn.de/explain-podcast/⁠

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